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Illumina NovaSeq 6000 Sequencing Services

Fast, Reliable and High-Quality Next Generation Sequencing

Illumina NovaSeq sequencing services require a trusted partner with proven expertise. As a certified service provider (CSP) for over a decade, SeqMatic stands at the forefront of genomic analysis. Our deep understanding of Illumina’s sophisticated chemistry and advanced sequencing platforms ensures reliable, high-quality results for every project.

The NovaSeq 6000 system performs Whole-Genome, Whole-Exome and Whole-Transcriptome sequencing. Its tunable output generates up to 8 Tb and 24B single reads in dual flow cell mode with streamlined workflows.

Service Highlights:

  • All services performed in the USA at our facility in Fremont, California.
  • 1-2 week turnaround for all run types; 5 day guaranteed Express Services available
  • PhiX spike-in included
  • Single or dual index reads for no additional charge
  • Custom primers are supported for no additional charge
  • Free demultiplexing (FASTQ) and S3 data transfer
SP Run Types per flow cell:
Read Length Indexing Read Read Count Data Output
1 x 100bp or 2 x 50bp Single or Dual Indexing Up to 1B Reads Up to 100Gbp
2 x 100bp Single or Dual Indexing Up to 1B Reads Up to 200Gbp
2 x 150bp Single or Dual Indexing Up to 1B Reads Up to 300Gbp
2 x 250bp Single or Dual Indexing Up to 1B Reads Up to 400Gbp
S1 Run Types per flow cell:
Read Length Indexing Read Read Count Data Output
1 x 100bp or 2 x 50bp Single or Dual Indexing Up to 2B Reads Up to 175Gbp
2 x 100bp Single or Dual Indexing Up to 2B Reads Up to 350Gbp
2 x 150bp Single or Dual Indexing Up to 2B Reads Up to 500Gbp
S2 Run Types per flow cell
Read Length Indexing Read Read Count Data Output
1 x 100bp or 2 x 50bp Single or Dual Indexing Up to 4B Reads Up to 350Gbp
2 x 100bp Single or Dual Indexing Up to 4B Reads Up to 700Gbp
2 x 150bp Single or Dual Indexing Up to 4B Reads Up to 1200Gbp
S4 Run Types per flow cell:
Read Length Indexing Read Read Count Data Output
2 x 100bp Single or Dual Indexing Up to 12B Reads Up to 3000Gbp
2 x 150bp Single or Dual Indexing Up to 12B Reads Up to 4000Gbp


Illumina Specification (# of reads expected) VS. SeqMatic (# of reads generated)

“SeqMatic exhibits the best in sequencing performance, customer service, and turnaround. My experience in getting several runs completed was an absolute pleasure, and I would recommend SeqMatic to anyone with sequencing needs!”

Customer F.G.

San Francisco, CA

Haddock, Naomi L., et al. “Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases.” Nature Microbiology (2023): 1-13.
Xia, Dan, et al. “Novel App knock-in mouse model shows key features of amyloid pathology and reveals profound metabolic dysregulation of microglia.” Molecular Neurodegeneration 17.1 (2022): 41.
Crespo-Garcia, Sergio, et al. “Pathological angiogenesis in retinopathy engages cellular senescence and is amenable to therapeutic elimination via BCL-xL inhibition.” Cell Metabolism 33.4 (2021): 818-832.
Aldinger, Kimberly A., et al. “Spatial and cell type transcriptional landscape of human cerebellar development.” Nature Neuroscience 24.8 (2021): 1163-1175.
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